Improve multiqc report

Small improvement in multiqc report:

• Make one config yaml common to sr and hifi
• Remove flagstat of post host filtering --> useless information: show only that bam has no aln after host reads filtering.
• Increase max rows in bin table to still nicely display bins when there are many.
• Improve order of bin multiqc section: drep bins should be at the end.
• Organise files in multiqc process to see clearly the different files used. (Now all the files needed are dump at the root of the process work dir)
• remove organism column in prokka table

assigned to @jean.mainguy

changed the description

mentioned in commit c509926c

marked the checklist item remove organism column in prokka table as completed

marked the checklist item Make one config yaml common to sr and hifi as completed

mentioned in commit b452966b

mentioned in commit 2079769b

marked the checklist item Remove flagstat of post host filtering --> useless information: show only that bam has no aln after host reads filtering. as completed

mentioned in commit 956dc4c0

mentioned in commit 7702a038

marked the checklist item Increase max rows in bin table to still nicely display bins when there are many. as completed

marked the checklist item Improve order of bin multiqc section: drep bins should be at the end. as completed

changed the description

changed the description

marked the checklist item Organise files in multiqc process to see clearly the different files used. (Now all the files needed are dump at the root of the process work dir) as completed

closed

mentioned in merge request !22 (merged)