Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
W
wf-Illumina-nf
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package Registry
Container Registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Terms and privacy
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
GeT-nextflow-NGL-Bi
wf-Illumina-nf
Commits
332903e5
Commit
332903e5
authored
1 month ago
by
Jules Sabban
Browse files
Options
Downloads
Plain Diff
Merge branch 'dev_caro' into 'master'
test with yml modif comment See merge request
!32
parents
a3a926d6
96ba6639
No related branches found
Branches containing commit
Tags
V1.27.4
Tags containing commit
1 merge request
!32
test with yml modif comment
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
assets/multiqc_config.yaml
+5
-0
5 additions, 0 deletions
assets/multiqc_config.yaml
with
5 additions
and
0 deletions
assets/multiqc_config.yaml
+
5
−
0
View file @
332903e5
...
...
@@ -58,6 +58,10 @@ remove_sections:
-
fastp-seq-content-gc
-
flash-histogram
section_comments
:
fastqc_sequence_counts
:
"
Tips
:
Use
this
graph
to
visualize
the
amount
of
each
samples.
Shouldn't
be
use
to
determine
the
proportion
of
duplicated
reads
(see
'General
Statistics')."
sortmerna
:
"
Total
rRNA
percentage
is
available
in
the
'General
Statistics'.
Non-rRNA
sequences
are
NOT
USED
for
this
graph."
module_order
:
-
fastqc
:
name
:
"
ReadsStats"
...
...
@@ -72,6 +76,7 @@ module_order:
-
fastq_screen
:
name
:
"
ContaminationSearch"
#info: "This section shows the module with different files"
info
:
"
This
analysis
is
performed
by
permissive
alignments
using
BWA,
which
display
a
certain
amount
of
false
positive
hits.
Thus,
don't
worry
if
a
low
percentage
of
contamination
is
present.
This
analysis
has
limited
interest
on
transcriptomic
reads.<br>"
target
:
"
FastQ-Screen"
-
sortmerna
:
name
:
"
ContaminationSearch
-
rRNA"
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment